Integrating spatial indicators in the surveillance of exploited marine ecosystems

Spatial indicators are used to quantify the state of species and ecosystem status, that is the impacts of climate and anthropogenic changes, as well as to comprehend species ecology. These metrics are thus, determinant to the stakeholder's decisions on the conservation measures to be implemented. A detailed review of the literature (55 papers) showed that 18 spatial indicators were commonly used in marine ecology. Those indicators were than characterized and studied in detail, based on its application to empirical data (a time series of 35 marine species spatial distributions, sampled either with a random stratified survey or a regular transects surveys). The results suggest that the indicators can be grouped into three classes, that summarize the way the individuals occupy space: occupancy (the area occupied by a species), aggregation (spreading or concentration of species biomass) and quantity dependent (indicators correlated with biomass), whether these are spatially explicit (include the geographic coordinates, e.g. center of gravity) or not. Indicator's temporal variability was lower than between species variability and no clear effect was observed in relation to sampling design. Species were then classified accordingly to their indicators. One indicator was selected from each of the three categories of indicators, to represent the main axes of species spatial behavior and to interpret them in terms of occupancy-aggregation-quantity relationships. All species considered were then classified according to their relationships among those three axes, into species that under increasing abundancy, primarily increase occupancy or aggregation or both. We suggest to use these relationships along the three-axes as surveillance diagrams to follow the yearly evolution of species distributional patterns in the future.MSFD from Franceinfo:eu-repo/semantics/publishedVersio

Estabilidad de las relaciones entre las agrupaciones de peces demersales y los factores ambientales-actividad pesquera a gran escala espacio-temporal en el norte del mar Mediterráneo

Trawling pressure and environmental changes may affect the composition of fish assemblages. Our knowledge on large spatio-temporal patterns of demersal fish composition remains incomplete for the Mediterranean Sea. We investigated (1) the spatio-temporal stability of demersal assemblages, (2) the relationships between these assemblages and potential structuring factors (trawling pressure and environmental conditions) in order to assess the dynamic of the assemblage structure at the scale of the northern Mediterranean Sea. We analysed a dataset of 18062 hauls from 10 to 800 m depth performed annually during the last two decades across 17 Geographical Sub-Areas (GSAs) (MEDITS program). A multi-table analysis (STATICO-CoA) evidenced a strong inter-GSAs stability in the organization of assemblages, with specificities for some GSAs. The most stable structuring factors were linked to combined gradients of chlorophyll a, phytoplancton carbon biomass and temperature, inversely correlated with depth, salinity and nutrient gradients (axis 1 of the STATICO-CoA compromise, 93.74% of the total variability). A common pattern linking the distribution of species to these environmental gradients was evidenced for most of the 17 GSAs. Estimate of trawling pressure showed a minor role in the organization of the assemblages for the spatial scale and years investigated (axis 2, 4.67%).La presión pesquera y los cambios ambientales pueden afectar a la composición de las agrupaciones de peces. En el Mediterráneo, nuestro conocimiento a gran escala sobre los patrones espacio-temporales de la composición de especies de peces demersales sigue siendo incompleto. Investigamos (1) la estabilidad espacio-temporal de las agrupaciones demersales (2) las relaciones entre dichas agrupaciones y los posibles factores estructurantes (presión pesquera de arrastre y condiciones ambientales) para evaluar la dinámica de la estructura de las agrupaciones en el norte del mar Mediterráneo. Analizamos un conjunto de 18062 lances entre 10 y 800 m. de profundidad realizados anualmente, durante las últimas dos décadas, en 17 sub-áreas geográficas (GSAs) (Proyecto MEDITS). El análisis multi-tablas (STATICO-CoA) evidenció una fuerte estabilidad inter-GSAs en la organización de agrupaciones, con especificidades para algunas GSAs. Los factores estructurantes más estables se relacionaron con los gradientes combinados de clorofila a, fitoplancton, carbono y temperatura, correlacionados inversamente con los gradientes de profundidad, salinidad y nutrientes (eje 1 del STATICO-CoA, 93.74% de la variabilidad total). En la mayoría de las GSAs encontramos un patrón común que vincula la distribución de las especies a estos gradientes ambientales. La estimación de la presión pesquera de arrastre mostró un papel menor en la organización de las agrupaciones para la escala espacial y los años investigados (eje 2, 4.67%)

A global database for metacommunity ecology, integrating species, traits, environment and space

The use of functional information in the form of species traits plays an important role in explaining biodiversity patterns and responses to environmental changes. Although relationships between species composition, their traits, and the environment have been extensively studied on a case-by-case basis, results are variable, and it remains unclear how generalizable these relationships are across ecosystems, taxa and spatial scales. To address this gap, we collated 80 datasets from trait-based studies into a global database for metaCommunity Ecology: Species, Traits, Environment and Space; “CESTES”. Each dataset includes four matrices: species community abundances or presences/absences across multiple sites, species trait information, environmental variables and spatial coordinates of the sampling sites. The CESTES database is a live database: it will be maintained and expanded in the future as new datasets become available. By its harmonized structure, and the diversity of ecosystem types, taxonomic groups, and spatial scales it covers, the CESTES database provides an important opportunity for synthetic trait-based research in community ecology

Food limitation of juvenile marine fish in a coastal and estuarine nursery

International audienceDespite their importance for species conservation and sound management of exploited living resources, the density-dependent mechanisms that regulate wild populations are among the least understood process in ecology. In many marine fish species, there is strong evidence that regulation occurs at the juvenile stage, when individuals concentrate in spatially restricted nurseries. However, little is known about the underlying mechanisms. Whether competition for food resources determines fish growth and survival is particularly controversial. We investigated whether food supply may have limited juvenile fish production (integrating both growth and survival) in a coastal and estuarine nursery in western Europe. Using a recent bioenergetics-based approach, we calculated annual macrobenthic food production (FP) and annual food consumption (FC) by juvenile fish and predatory invertebrates for three consecutive years (2008–2010). We also calculated exploitation efficiency (FC:FP) and used it as an index of food limitation. Results revealed substantial interannual variations in FP (FP ~2–3 times higher in 2008 and 2010 than in 2009). FC by young-of-the-year fish followed a fairly similar pattern. In addition, predatory invertebrates consumed as much food as juvenile fish, highlighting the need to consider all dominant epibenthic predators when estimating the overall predation pressure on macrobenthic prey. Lastly, exploitation efficiency of the entire epibenthic predator community reached ~30% in 2009, which is relatively high despite the conservative modeling approach. Overall, these results suggest that food supply may have limited juvenile fish production during the study period, at least in 2009. Nonetheless, further studies based on longer time-series and/or other study sites are required to strengthen these findings

Stability of the relationships among demersal fish assemblages and environmental-trawling drivers at large spatio-temporal scales in the northern Mediterranean Sea

Trawling pressure and environmental changes may affect the composition of fish assemblages. Our knowledge on large spatio-temporal patterns of demersal fish composition remains incomplete for the Mediterranean Sea. We investigated (1) the spatio-temporal stability of demersal assemblages, (2) the relationships between these assemblages and potential structuring factors (trawling pressure and environmental conditions) in order to assess the dynamic of the assemblage structure at the scale of the northern Mediterranean Sea. We analysed a dataset of 18062 hauls from 10 to 800 m depth performed annually during the last two decades across 17 Geographical Sub-Areas (GSAs) (MEDITS program). A multi-table analysis (STATICO-CoA) evidenced a strong inter-GSAs stability in the organization of assemblages, with specificities for some GSAs. The most stable structuring factors were linked to combined gradients of chlorophyll a, phytoplancton carbon biomass and temperature, inversely correlated with depth, salinity and nutrient gradients (axis 1 of the STATICO-CoA compromise, 93.74% of the total variability). A common pattern linking the distribution of species to these environmental gradients was evidenced for most of the 17 GSAs. Estimate of trawling pressure showed a minor role in the organization of the assemblages for the spatial scale and years investigated (axis 2, 4.67%).S

Stability of the relationships among demersal fish assemblages and environmental-trawling drivers at large spatio-temporal scales in the northern Mediterranean Sea

Trawling pressure and environmental changes may affect the composition of fish assemblages. Our knowledge on large spatio-temporal patterns of demersal fish composition remains incomplete for the Mediterranean Sea. We investigated (1) the spatio-temporal stability of demersal assemblages, (2) the relationships between these assemblages and potential structuring factors (trawling pressure and environmental conditions) in order to assess the dynamic of the assemblage structure at the scale of the northern Mediterranean Sea. We analysed a dataset of 18062 hauls from 10 to 800 m depth performed annually during the last two decades across 17 Geographical Sub-Areas (GSAs) (MEDITS program). A multi-table analysis (STATICO-CoA) evidenced a strong inter-GSAs stability in the organization of assemblages, with specificities for some GSAs. The most stable structuring factors were linked to combined gradients of chlorophyll a, phytoplancton carbon biomass and temperature, inversely correlated with depth, salinity and nutrient gradients (axis 1 of the STATICO-CoA compromise, 93.74% of the total variability). A common pattern linking the distribution of species to these environmental gradients was evidenced for most of the 17 GSAs. Estimate of trawling pressure showed a minor role in the organization of the assemblages for the spatial scale and years investigated (axis 2, 4.67%)

A functional vulnerability framework for biodiversity conservation

Number: 1 Publisher: Nature Publishing GroupSetting appropriate conservation strategies in a multi-threat world is a challenging goal, especially because of natural complexity and budget limitations that prevent effective management of all ecosystems. Safeguarding the most threatened ecosystems requires accurate and integrative quantification of their vulnerability and their functioning, particularly the potential loss of species trait diversity which imperils their functioning. However, the magnitude of threats and associated biological responses both have high uncertainties. Additionally, a major difficulty is the recurrent lack of reference conditions for a fair and operational measurement of vulnerability. Here, we present a functional vulnerability framework that incorporates uncertainty and reference conditions into a generalizable tool. Through in silico simulations of disturbances, our framework allows us to quantify the vulnerability of communities to a wide range of threats. We demonstrate the relevance and operationality of our framework, and its global, scalable and quantitative comparability, through three case studies on marine fishes and mammals. We show that functional vulnerability has marked geographic and temporal patterns. We underline contrasting contributions of species richness and functional redundancy to the level of vulnerability among case studies, indicating that our integrative assessment can also identify the drivers of vulnerability in a world where uncertainty is omnipresent

Corrigendum to ‘‘Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea” [Prog. Oceanogr. 130 (2015) 65–74]

International audienceIncreasing human pressures and global environmental change may severely affect the diversity of species assemblages and associated ecosystem services. Despite the recent interest in phylogenetic and functional diversity, our knowledge on large spatio-temporal patterns of demersal fish diversity sampled by trawling remains still incomplete, notably in the Mediterranean Sea, one of the most threatened marine regions of the world. We investigated large spatio-temporal diversity patterns by analysing a dataset of 19,886 hauls from 10 to 800 m depth performed annually during the last two decades by standardized scientific bottom trawl field surveys across the Mediterranean Sea, within the MEDITS program. A multi-component (eight diversity indices) and multi-scale (local assemblages, biogeographic regions to basins) approach indicates that only the two most traditional components (species richness and evenness) were sufficient to reflect patterns in taxonomic, phylogenetic or functional richness and divergence. We also put into question the use of widely computed indices that allow comparing directly taxonomic, phylogenetic and functional diversity within a unique mathematical framework. In addition, demersal fish assemblages sampled by trawl do not follow a continuous decreasing longitudinal/latitudinal diversity gradients (spatial effects explained up to 70.6% of deviance in regression tree and generalized linear models), for any of the indices and spatial scales analysed. Indeed, at both local and regional scales species richness was relatively high in the Iberian region, Malta, the Eastern Ionian and Aegean seas, meanwhile the Adriatic Sea and Cyprus showed a relatively low level. In contrast, evenness as well as taxonomic, phylogenetic and functional divergences did not show regional hotspots. All studied diversity components remained stable over the last two decades. Overall, our results highlight the need to use complementary diversity indices through different spatial scales when developing conservation strategies and defining delimitations for protected areas

Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea

Increasing human pressures and global environmental change may severely affect the diversity of species assemblages and associated ecosystem services. Despite the recent interest in phylogenetic and functional diversity, our knowledge on large spatio-temporal patterns of demersal fish diversity sampled by trawling remains still incomplete, notably in the Mediterranean Sea, one of the most threatened marine regions of the world. We investigated large spatio-temporal diversity patterns by analysing a dataset of 19,886 hauls from 10 to 800 m depth performed annually during the last two decades by standardised scientific bottom trawl field surveys across the Mediterranean Sea, within the MEDITS program. A multicomponent (eight diversity indices) and multi-scale (local assemblages, biogeographic regions to basins) approach indicates that only the two most traditional components (species richness and evenness) were sufficient to reflect patterns in taxonomic, phylogenetic or functional richness and divergence. We also put into question the use of widely computed indices that allow comparing directly taxonomic, phylogenetic and functional diversity within a unique mathematical framework. In addition, demersal fish assemblages sampled by trawl do not follow a continuous decreasing longitudinal/latitudinal diversity gradients (spatial effects explained up to 70.6% of deviance in regression tree and generalised linear models), for any of the indices and spatial scales analysed. Indeed, at both local and regional scales species richness was relatively high in the Iberian region, Malta, the Eastern Ionian and Aegean seas, meanwhile the Adriatic Sea and Cyprus showed a relatively low level. In contrast, evenness as well as taxonomic, phylogenetic and functional divergences did not show regional hotspots. All studied diversity components remained stable over the last two decades. Overall, our results highlight the need to use complementary diversity indices through different spatial scales when developing conservation strategies and defining delimitations for protected areas.Versión del editor3,269

CESTES - A global database for metaCommunity Ecology: Species, Traits, Environment and Space

CESTES is a global database for metaCommunity Ecology: Species, Traits, Environment and Space. It compiles 80 datasets from trait-based studies. Each dataset includes four matrices: species community abundances or presences/absences across multiple sites, species trait information, environmental variables and spatial coordinates of the sampling sites. CESTES presents a harmonized structure and covers a diversity of ecosystem types (marine, terrestrial, freshwater), taxonomic groups (plants, vertebrates, invertebrates...), geographical regions, and spatial scales. The CESTES database is a live database: it will be maintained and expanded in the future as new datasets become available (https://icestes.github.io/sharedata). A zipped folder called “CESTES.zip” includes two alternative formats for the CESTES database: - a “xCESTES” folder that includes 80 Excel files (one file per dataset), each named according to the following structure: “AuthorPublicationYear.xlsx” - a “rCESTES” folder that includes the CESTES core processed database (comm, traits, envir, coord matrices) as an R list object “CESTES.RData” plus two R scripts, and two metadata tables for data processing and exploration. This “CESTES.zip” folder also includes: - an extended metadata table, “CESTES_metadata.xlsx”, that provides the general metadata information of all the datasets, - a tutorial document, “HOW_TO_SHARE_MY_DATA_FOR_CESTES.pdf”, that explains how to share data for integrating future datasets in the database. A second zipped folder, called "ceste.zip", corresponds to the non-spatial ancillary to CESTES. We provide access to 10 additional datasets that were not completely suitable for the CESTES database, due to the absence of spatial information or insufficient metadata but that were potentially valuable for their three other data matrices (comm, traits, envir). They follow the same structure as CESTES, except that they do not present the “coord” sheet and sometimes include only partial metadata. The “ceste.zip” zipped folder includes the 10 data files + 1 metadata file called "ceste_metadata.xlsx"